Scaffold Ga0133547_10583043

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0133547_10583043

Scaffold Ga0133547_10583043

Overview

Basic Information
Taxon OID	3300010883 Open in IMG/M
Scaffold ID	Ga0133547_10583043 Open in IMG/M
Source Dataset Name	western Arctic Ocean co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2240
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	190
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005103	Metagenome / Metatranscriptome	412	Y
F008914	Metagenome	326	Y
F099863	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133547_105830432	F005103	N/A	MKEEDNNIQIFINKKEMLYSHQNMARVINSFLPYLTNDDLTELGQDILELFNHREKKEVESKLEVEKHSWPYPDTKKQI*
Ga0133547_105830434	F099863	GAG	MDEEELEVIKKKERIFDFFWSREEQQTILGLLKGRKMKKELKEHLKNMEMK*
Ga0133547_105830435	F008914	N/A	MVDPFNIQIEYQREAAIEETRKWVRAWNADQREMVLWILQEEVRHDKLMDFIHEDGSKTTPEKMN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.