Scaffold Ga0133913

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10245478 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010885 Open in IMG/M

Scaffold ID

Ga0133913_10245478 Open in IMG/M

Source Dataset Name

northern Canada Lakes Co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4756
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4756

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F011390	Metagenome	291	Y
F033432	Metagenome	177	Y
F039133	Metagenome	164	N
F048994	Metagenome	147	N
F072322	Metagenome	121	N
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1024547812	F004583	AGGAG	MKNVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNPKASTEIATQISALEEVYKHQLSLVEMAESTEPKRAGWFSGQIKTKEDRLANIMD*
Ga0133913_1024547813	F076096	AGG	MICYNPEWENPLYWFDKLLTYSDHAELRSFERDLPLIDFLPVNSKFLYRVCKRDVYSMTFETTVNHKKIHIAINSLGIVMTAFPVLVTKADRFQFKYKQYLGAFKQPKDYLPPVITALDFQDVDVEYLEGVA*
Ga0133913_1024547814	F048994	AGGAG	MIGVVKIEFGLMNLYVNDVCVVSTNTMAGIRHAVKRYNLQGYLMGAE*
Ga0133913_102454782	F011390	GAG	MKDMEIKTTNYGVCKVKKHKYQTNGNLALSLIDETGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFVQTGEKVPSGYCEYPVCKLVKELA*
Ga0133913_102454784	F072322	GGAGG	METVDFVNATEFFDAMELGCGESDQFLSKFTYGDIRTTFTLVSRGTFLSYLKDFIIDCEDVYEKDVVMEALRDYNLSVDVRIKYVNIEA*
Ga0133913_102454785	F039133	AGGA	MNTTDKVIVRFKSRVPKMLYTAHYNGLLLASGRDPIDLGEYYACKYATEWILQDDKNFYTQRGVNK*
Ga0133913_102454787	F033432	AGG	MNYRIKFLSLWSSIMAEERWHKFESQACIPSCKGWNAWAPLCECGKNYCTFKPSGKLEEMQMVIEARPLDF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133913_10245478

Overview

Ecosystem & Geography

Associated Families

Sequences