NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10414781

Scaffold Ga0133913_10414781


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10414781 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3558
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031872Metagenome / Metatranscriptome181N
F033435Metagenome / Metatranscriptome177N
F097357Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0133913_104147812F031872GAGGMVESLVVDEWIYDTLTADTTLQDLMAVDNRAPNYQQGIYLYMAPEKDPISLRQPQVPYIVVRHTDGGQEDTKPLCGGRIMTTSVHQVWCWDTQSGAVSMARVKAIVDRIDTLLNRQTVNSTTPVFFLNRTSVSSSVDVSQDGRVDNGIAQTYVATITPEV*
Ga0133913_104147814F033435AGGALSSIFDNIPKLEGRPNHVVDIERFIGTPGSIVFREPKASDLFPRPEVEKMLKIAYPEFPAQMLQILMIMARCYVVQPGDGEINPARRFAQLARDRSDIYLYVVQEFARAFPIDIEQAVDEVPND*
Ga0133913_104147815F097357AGGVAQKILYNSVRHLKRHPRETDLTLEEFAEVAWAGEVWEEQIVEIVKAVMSVLAKRTL*
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