NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10621410

Scaffold Ga0133913_10621410


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10621410 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2834
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028149Metagenome / Metatranscriptome192N
F097235Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0133913_106214103F097235N/AMLAASYQDLSPRLKKKDFTMYGQMMGKRKMDGQGRMSSEVETIEFQPPKELKLDGESGSAMVEWRMTPSGTVEIVAFDGVTLGEKGPVDMAEDSAEMEMDDMEEEA*
Ga0133913_106214104F028149N/AGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDAISNTQPGAFACKAGLPAIAFSWVGTGYQVLRVTDTAAAAITAASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKETFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVTATQGIRSEFNPDYNNAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDSSQDYNSADPVCPRVIQFTAVPDDATNYVIGTTGILCDDNIVTNAGISSATVALLIVALQARWDAEFGAGSGTWSVVSGNLIQLSSTSCTNVTLEFAI*
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