NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137843_1147671

Scaffold Ga0137843_1147671


Overview

Basic Information
Taxon OID3300010932 Open in IMG/M
Scaffold IDGa0137843_1147671 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterHellenic Centre for Marine Research (HCMR)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location
Location NameSantorini, Greece
CoordinatesLat. (o)36.45421Long. (o)25.40539Alt. (m)Depth (m)229
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001039Metagenome / Metatranscriptome795Y
F003385Metagenome490N
F008339Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0137843_11476712F001039GAGGMIDXNLVLYFGIGLIVFGFVLFLVSIHFERQAEIKLFKLEQLDKAFRKAKQNERL*
Ga0137843_11476713F008339GAGMIYLIIRKYQYKDTTPDYRVAKWSNTIKEANQFLSALSLLEDDESTMYFIVPAQENXALILTDEVAX*
Ga0137843_11476714F003385N/ALNNIPENFVITYYAKKHKKIITRNGSWTKPTDFMXTGKAFISKNGVVCFIYWDNDAEPDEKGNQWRMAINPMTIKATQTIEG*
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