NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137936_1017059

Scaffold Ga0137936_1017059


Overview

Basic Information
Taxon OID3300010933 Open in IMG/M
Scaffold IDGa0137936_1017059 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1383E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)22.8Long. (o)-46.05Alt. (m)Depth (m)4425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094843Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0137936_10170592F094843AGGAGMIACVHVAKILPGKKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDREALLVTVYEAEDPSVVERFYKLEPVLQQEARAHGVLVAPHDHEAVPNNVAFVDMDLTS*

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