Scaffold Ga0137844_1040148

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137844_1040148

Scaffold Ga0137844_1040148

Overview

Basic Information
Taxon OID	3300010934 Open in IMG/M
Scaffold ID	Ga0137844_1040148 Open in IMG/M
Source Dataset Name	Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Hellenic Centre for Marine Research (HCMR)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1475
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location
Location Name	Santorini, Greece
Coordinates	Lat. (^o)	36.4542567	Long. (^o)	25.40523	Alt. (m)		Depth (m)	229
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011035	Metagenome	296	Y
F030780	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137844_10401481	F030780	GGA	MTDKIKQAVWVFDVELNRKKRIQLQTLLDRANHSFRHENIKYFALEKD
Ga0137844_10401482	F011035	GAGG	MICIDTTLLAIILAPIIIGAWFCLKENKRDKXQDWKPHD*

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