NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138308_106962

Scaffold Ga0138308_106962


Overview

Basic Information
Taxon OID3300010965 Open in IMG/M
Scaffold IDGa0138308_106962 Open in IMG/M
Source Dataset NameMicrobial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMax Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7764
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location
Location NameLake Cadagno, Switzerland
CoordinatesLat. (o)46.5499Long. (o)8.711Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000852Metagenome / Metatranscriptome860Y
F006846Metagenome / Metatranscriptome363Y
F020166Metagenome / Metatranscriptome225Y
F021988Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0138308_10696215F020166N/AMKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPEKDAV*
Ga0138308_10696216F006846AGGAMLFNLVEKYLMRPKRLREAIEAVVHENDELLRILKQHEEEGPTNLTWCEGDTWYGWTYNPKLNRYYFDDIGNKSIMGLWEDQWLREADEYDLGGES*
Ga0138308_10696219F000852GGAMATKREYLKSQGITVGARGRFSGAAKVALQEAAAKGITFTAEVPTGKAK*
Ga0138308_1069627F021988AGAAGMTNSFKKDDGTGTTPPPNGGAAGSVTSREATRKNPKQGMVVDRNKHGIRRETSLIPKAPKKTGRKKI*
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