Scaffold Ga0139250_1034238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0139250_1034238

Scaffold Ga0139250_1034238

Overview

Basic Information
Taxon OID	3300010968 Open in IMG/M
Scaffold ID	Ga0139250_1034238 Open in IMG/M
Source Dataset Name	Microbial communities from the middle layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.mid
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Hellenic Centre for Marine Research (HCMR)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5294
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat → Inactive Hydrothermal Chimney Metagenome Study

Source Dataset Sampling Location
Location Name	Kolumbo submarine Volcano, Hellenic Volcanic Arc, Aegean Sea, Greece
Coordinates	Lat. (^o)	36.52	Long. (^o)	25.48	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F095691	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139250_10342385	F095691	GGA	MLQHDGSIKIAWHADRFEAILVRARFRPSEELEGYASGVADVALLERSLADLRRALRKQYPGEFDLVTREPLSASWQVIISFHPPRGEPNPDPW*

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