NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138324_10179738

Scaffold Ga0138324_10179738


Overview

Basic Information
Taxon OID3300010987 Open in IMG/M
Scaffold IDGa0138324_10179738 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Antarctic Ocean - ANT-7 (Eukaryote Community Metatranscriptome) (version 6)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)965
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)18.7998Long. (o)-20.70285Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079576Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0138324_101797381F079576AGGAMLTIASRSRLAAVVPRAARPFAASPWGTDHWRHDKHEFITWVRRAAKEEKSRERREFYAFCAISFGDVDTDKDGFINHRQFDRLLETVAATPRRFGLAPQSTLNYDDRLAQHKALFDRLDTAGGPARGLIAMDQFVDWATEHLLERLDRIPEKDVSLLHPENYTEKEYLDFIEIAISDKTSYNRSGFYNFMLNIFVEADESCSGRVNRAQFDALLCRAAQVPRHFGLAPPDVDKATRDKMFDSIELRRGDKRTGYVTFRKFYEWSIDHIALKIRLHKAGK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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