NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139311_1264870

Scaffold Ga0139311_1264870


Overview

Basic Information
Taxon OID3300010998 Open in IMG/M
Scaffold IDGa0139311_1264870 Open in IMG/M
Source Dataset NameRumen fluid microbial communities from healthy moose, Palmer, Alaska - F02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOhio State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Source Dataset Sampling Location
Location NamePalmer, Alaska
CoordinatesLat. (o)61.5997Long. (o)-148.112Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055347Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0139311_12648701F055347N/AMASKKKKIQITIELKSREELNEYLTPTYPKVVVIDAYHPFWGRCDVAEIMLKKFQEEPANANKVDWVSIPYEFVADIVPKEKDEKGEVIPIGSKPRYYIFVKGEYFSFINGIDFPKLREEINKSYAKFEESS*
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