NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1001447

Scaffold Ga0139557_1001447


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1001447 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5474
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F008741Metagenome328Y
F009142Metagenome322Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10014472F009142N/AMNNSVQINVEDALDNLLANIPNLNVYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRFLDFSEQRNSMYVGVI*
Ga0139557_10014474F005584AGGAGGMAGTIDTSYFSTDLQFMIADMFQTVTGLGSSAVSASVTDLTTASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT*
Ga0139557_10014475F008741GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYQGVFDLTSYVKAGHRQGDVIDLEVWPNQYEAYRKSRRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPETYNLVAPFGLSQGYYRNPLDLIVRARQTMGKDSFFVLCPADIKIQGLNTYTATSVEQMAKAIRGATDFWAINSTPIILASATRKDKQTGFFPQKNEWETDNIFDFEGLTRMD*
Ga0139557_10014478F003049AGGGGGMKNAKQVIGCRKSKKGEDIKGLGVIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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