Basic Information | |
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Taxon OID | 3300011010 Open in IMG/M |
Scaffold ID | Ga0139557_1001479 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5424 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 41.825 | Long. (o) | -82.975 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002707 | Metagenome | 535 | Y |
F015866 | Metagenome | 251 | Y |
F104700 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0139557_10014794 | F104700 | AGG | MKLETISLCGGFNGLYMPHPLGREKYGYFLITDSMGEQPPIVGQKCAIGWYTDDAQFLGYLDVDQWE* |
Ga0139557_10014797 | F015866 | AGG | MKFYKAILDSRRFHFEAYAINETLAKEHLKLGLNNHAKDYQMPLDWWHEYGGDIYVIQIEIGRPDFNSCYRDNHLISEKK* |
Ga0139557_10014799 | F002707 | AGG | MSQIEALTQCLVLAITAPTDEKATQASQLAEQIAQGLTKKQVNQCKKKALEILEEA* |
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