NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1003861

Scaffold Ga0139557_1003861


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1003861 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3241
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037125Metagenome168Y
F070036Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10038613F070036AGGAGMEKKSLEKRFLCQNRNKNIVSVPIKYIKYSNQFDKHNWLSLKVRSERDNLYLKDNLARKRLNTLPDINNLFNPIILYACDYLICIFGNKRLKTAIDKGYTHIDCLIYDGFQQAVIVGTSIWNTFKEHKLSKVDSFLTNDNDTITNIDRYMVEEKQIIDDYATHQQILTREALKSNLDIMETGCGYYSTPILVEIAKSKGIKLIGFVQEINWARRFDYLIGDHYQQIQIDFEKEIPLTQGFGMCFLDHEQLIKDRIKHLNHILKHTDTVVVHDADKVSSFALLHKPYTIEMFEHLTPNTAVIKNV*
Ga0139557_10038616F037125N/AECMCERTKPKMLDKKMRGTNDLEVIIYNLKKEIDRLNEELQAKDIELKKLQSND*
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