NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139557_1005568

Scaffold Ga0139557_1005568


Overview

Basic Information
Taxon OID3300011010 Open in IMG/M
Scaffold IDGa0139557_1005568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2629
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)41.825Long. (o)-82.975Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002653Metagenome539Y
F010672Metagenome300Y
F021488Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0139557_10055682F002653AGGAGMSYVDGDYSMTEEELERRVEAMSEEEQHHFRLLIHKVVMCYGEGKAQGVFIIGRAEDQVAGVVTLNCNEMEASQLMLAANDFFGFLNVLGAPPKENFN*
Ga0139557_10055688F021488GGAGGMSDASFNKEDFNRIFGVPIKDIKEDYPMIRNAVLEEVALEFDAMRIAFGDTADSFARYVREMKS*
Ga0139557_10055689F010672N/AKKTFNVTNNISRVTFDYIKNNPGSTRKEIIEALEHQGFAGGSTSSLIAQMRRNNMIHETNNAYYADIAEYRPIKSLKAMKKMEQVPAPPKRKYEKKAVTGIGALLREKLENTPMPSQDALDAAAYAMGGNAPKRFTTLVRTKSPDDILKDMTVFQARELYDYLKKMFGG*
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