NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114934_10005844

Scaffold Ga0114934_10005844


Overview

Basic Information
Taxon OID3300011013 Open in IMG/M
Scaffold IDGa0114934_10005844 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7440
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5275Long. (o)25.4914Alt. (m)Depth (m)482
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017150Metagenome / Metatranscriptome242Y
F074975Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114934_100058441F074975N/AREAYKEWAGDSGPNWILDLDGPDGNVYNLWGILEQFFELCEWEGDPVEESKTGGNYDESIRHTYPYEGYDAVLDYCLHHLIPSPAGVEFRMYGHEVGQVSDYHYALSQQGDE*
Ga0114934_100058449F017150AGGAMMKKDAIPAGAGIDLVVDYEDQEDWLQDSIVIKNVDMGYLTGNHDALIRTLEQAVIDETRSMYNPPSRYIEIMGYAPADSDVTVKRGVNFWTSDDNIFTQ*
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