NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138582_1106088

Scaffold Ga0138582_1106088


Overview

Basic Information
Taxon OID3300011062 Open in IMG/M
Scaffold IDGa0138582_1106088 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021724Metagenome / Metatranscriptome217Y
F055497Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0138582_11060881F021724N/ARDTIASGRGDIQFWGINDTWGGENYGIPSGTYTPNVAVNGYYSPTPLEQVSVTLSGNPTSISDHLFLGPGFNVSVYSIDWERPRVSRNWVWTGCQTGTDSSCVGSEIDVGFYPVTNGTGGALADYFGAETTYQPPSVNFANNFGGLYQGPGGIDCITPFQEGSSEFWSTNCAEMDGGGRNVLQNYANSHDVYYGQSARYAFVGLHVGILWILESNQASQE*
Ga0138582_11060882F055497AGGAMWTTPILTWPLHFSEGAYDLAAYTYGYVQDKDFTAYAMNGQVADMKINLIIGVNVSLQILFKKESIITPTAMNMSGRVRLFNDQGQMVATWMSSEGTYVPTTGNAVAANGELGALNSKCVNAEDDGVGMFCTSPYPFSNQGGSPFTTPSTGLNGYNYIPAGTKLLKVDLAGLPQQVPLGSDITGVYFGDPLQGGSCDFELDCYPAAYAAYPFPNSGIPGAPDYTGGWTAEVDFVPWYSANAATPELASGTSQTPTTTGSYAQYYPPVNGLLMGESYHIIPGTTAPSGISWT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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