NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138526_1061340

Scaffold Ga0138526_1061340


Overview

Basic Information
Taxon OID3300011082 Open in IMG/M
Scaffold IDGa0138526_1061340 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062503Metagenome / Metatranscriptome130Y
F072641Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0138526_10613401F072641N/APPPLRSSVFDDKKVLLIDPHQCTRDVRASVLRSHGIEVDATDSVQAARSLWRPKLYDLTLLAARGHFPGDALDFYVEIKHASPGERVVFLVGPPTFLSLTWPTEVMAPEKEPQQWAETVRRFVTAA*
Ga0138526_10613402F062503N/AMGMELTMKDLSQVLSQKEMDIERVRKEIKALHFVIPLLAEDADRFEHGLASLPVSQLGGTGTTAVK

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