Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1280 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1280 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20195
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (51.22%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

20195

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (51.22%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004049	Metagenome / Metatranscriptome	455	Y
F005388	Metagenome / Metatranscriptome	402	N
F011216	Metagenome / Metatranscriptome	293	Y
F028148	Metagenome	192	Y
F074789	Metagenome	119	Y
F086598	Metagenome / Metatranscriptome	110	N
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_128010	F074789	N/A	MQSTIETFRALESDGQVRLRALPETESYFDVYGEPDSPEERQEIIDQIERSGCWFVISEYFADGEWHHADSVGMCVGYENPLNPAENCYIEDLMRSAIRAHEMLSTEGAMI*
Ga0151517_128011	F028148	N/A	MKTIHQVIHEIQFFDPAVRAFDAHDLPQSVRAYLHNKYPMDARLTDDEQQLIEVSFEPFADNLREVFQDDPRPDATRFYLFDDLSLYVRTNAGPELWADAQVFVVERILPRMRLSRLEADLMREIGMDDQVNEVRDDFFSAFAHVLHRDCGIPHCDAREHWNAFSRQLSDSACESIVLGGGESGRAEGLRFASEYSVSNA*
Ga0151517_128014	F002227	N/A	MKLTISSKTNAQTIIDLFNAIITGETEEHGATPMSIYDDDKHICSIVAANGEQILELIIEREPGDRICPAFEGNPDEEKLP*
Ga0151517_128017	F001964	AGGAGG	MSRNLFAPPKFKVQVSGAIGWSDLKERVVSYRTLEYPTRKEAESVAKELNPGEFTQGRIRVVPVEMSEDYDVYPTPERTKTNP*
Ga0151517_12802	F005388	GGTGG	MASHNVGLTSVKFHNLMACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPAGVNEFPWIDGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRYAEMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVYSVNPSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWLPTNYMGEWQWVTGAYKLNVDCADPLEKKGQHYAEFIHAPEPVFTNQGMTIIFRRCTGALTTVICS*
Ga0151517_128020	F086598	N/A	METDKSSVLKDQLEKAATMFKRISESVDRIEKTLKEHERKINEALKRSSCQDDDDDDSWEGFGPKPERQPFNPNAETYTLVLHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAHLQRIEERLGRKIFKYPLATT*
Ga0151517_128023	F003748	N/A	MFKVNRKDAGGSYINAEGEYTVTVMKVEETLDAKGREVCKVTFATDDGASIADRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGVKGSYANFLRGMIGLELAIVVRAEEYESNGEKKKAYRIKTMKAIATTEAEEKPF*
Ga0151517_128032	F011216	AGGAGG	VKHLVNANKKVVSKTPRTDRQVRLWSDLNQQWVKIGFARQLERQLAGANKRIKELELKEDELNDLKKRLEGR*
Ga0151517_128033	F004049	GGAGG	MNVPIGPAAFVFKHKRTKQIVVVSNERWHELYANKEDWEHTSSLNACGALQYIIDAKPAERNRYIKRLTEYP*
Ga0151517_12804	F000922	AGG	MKAEQWTKAKSLYLAGKTWKAIADDLGLNQSTLLSKASREGLPKVRKELRNTVSSKETVSLESLSALVRNKLAADAASTLERVEGYVLEGIKDESVRETILASVAKRSALTFGWAETGEAPSVSVNILGALPDRNSVEVQVQGEPEIK*
Ga0151517_12809	F086618	N/A	MASIQRIETAVSNLINGNLTDARKSARGLSYSDIFDWLTGSVGWSENRSRAYADYLKNRIDFRSFCETSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1280

Overview

Ecosystem & Geography

Associated Families

Sequences