Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10001 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10001 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	125970
Total Scaffold Genes	212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	103 (48.58%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

125970

Total Scaffold Genes

212 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

103 (48.58%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F021106	Metagenome	220	Y
F039034	Metagenome	164	Y
F102821	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_10001102	F004863	AGGAG	MKLMVAGCSFSAVSKTLPGTAWSERLAQKLGWDLVNLARQGCSNGGIRIQIDEIRRQRPDLAIIGPTFWDRMEIPADSAPYDWNRAPSTGENPPLEQHLQNRKLGNGYRREDGIRNVNYGTESSNMICETIFTLAENYEHPYRMGRITKQAQIGIRHWIDSIYDNAWKKQQDEWIIREGILMMFLDGIKFIVLPNLLWPFDPDNQSLWRDAFPAIIPDHYINLNESLQAICGNNPFEGEDPGYHSSPAGQQIIADNFYQHWITHFK*
Ga0151515_10001104	F006099	AGGA	MTSAKILYLARYRVPHAIMSLQPEFTRHLIGVDRTCIASPVPKDELWTVFEQYGVDTSKFDYAPDSEIYRLYPEVNNWVFDGDYRTYWLRQQAIKFAFLDMLDYDLMIMHDCDCLLIKDYEPFKDGRLNFMVLENERHSWGYYESIKNALGFERLTPHCFISEFVPVLKKDFNDLVKFLEDKHKKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWAMSRNDITMEFQRRYHYDSMEKIGDFDPTYHTAVCDAVPDLRFSLQYDWDKKEIPQFEYYMDKIRERLAR*
Ga0151515_10001154	F102821	N/A	MIVRLANKIGQAHGRFFMWLGKKAESNPWWAVALTVWALYEIGEHIAGPVMAIMYATGHLVIQ*
Ga0151515_1000129	F021106	N/A	MSGWNTIQTIRKLEERADLLGMKFTAYRHDDRWGENVALVPKDPDALPIYSRDAQLFVGSLEHADRFMQGVLWAREYDRMTIDRNLDKKRERKEQDERNQQMAKTLKNGKMPTLVKT*
Ga0151515_100013	F039034	AGGAG	MKAVNLDTDNAGFYAFAAARDARMRAAAMWSHYTSTQRTRAERMKLGLELCYSASAIYINPRNKFIAIKVDQPTVRDRKNLALLEKDYEKLGDITKVSTKQGITYRIAKPC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10001

Overview

Ecosystem & Geography

Associated Families

Sequences