NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10008

Scaffold Ga0151515_10008


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10008 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)73932
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (77.68%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058136Metagenome135Y
F061842Metagenome131N
F063684Metagenome129Y
F066712Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_10008103F066712GGAMNSMFNFNPDEKRVQLAALLQDPTQPYRKYNGPLGAGSSAGGGMNSEIMKMLMQDKQKKAPVVEKSTQYDPASQNFTPANY*
Ga0151515_1000839F061842GAGMTLTQFKVVLEKFMLARSRYMNSPTSTTTKAWKAADLELANAYAKYMETRK*
Ga0151515_1000840F058136GGAGMIQTNEEKVAAAIAYLRLRGKYLLDNGKWTPTPAGQTDVKKTMQQYREAVK*
Ga0151515_1000852F066712GGAMNSMFNFNPDEKRVQLAALLQDPTQPYRKYSGPLGAGPSAGGGMNSEIMKMLMQDKQKKAPVVEKSTQYDPASQNFTPSNY*
Ga0151515_1000886F063684AGGMRIQTAVISTKELQDALRIYCSDKAGIPDTVIIKSYAKQIVVSLDPGGMVAADEFNHAATGA*
Ga0151515_1000890F061842GGAGGMTLTQFKVVLEKFMLARGRYMNSPTSVTTKAWKAADLELALAYNKYMETRK*
Ga0151515_1000891F058136GGAGMIKTNDEKVREAIAYLRSRGKYLLDGCKWVPTPAEKTDVKKTMEQYREAMK*
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