Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10033 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10033 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	54075
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (76.06%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

54075

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (76.06%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002933	Metagenome / Metatranscriptome	519	Y
F047558	Metagenome	149	N
F048255	Metagenome / Metatranscriptome	148	Y
F072099	Metagenome	121	Y
F083916	Metagenome	112	Y
F090296	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1003311	F047558	GGA	MVTKKPPAKVAPVKRRTPKPKAEQTINVSVAAPAPAPKTEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITNSSHQPELKEIKVLEQVAEKLKKDLEAETVLVHKVVLAVNSRTTLLAYGPKGRDAILDGYIASLFGKDPARNAAIVAMMNGEVYCDKLTPSGKTAEWEEKQGVGFICRGSIPPEVGTFEGYISVGFTKEPQDLGTVKTRINLAATEMAK*
Ga0151515_1003312	F002933	GGA	MIPPLNKWYPKVEASGYPDKTDALERRAERLEEEYKQALKMKKEINKLEDLDFELYVKRAEQNQLRLEIFTNRKLDIMI*
Ga0151515_1003313	F083916	N/A	VREFYGIAYKIHNPSERHLQMIQWLKNNAPYCKSSDYVVIWNNLSEWAGSADSAETRGLVIHGYKEALEREKK*
Ga0151515_1003331	F090296	N/A	MDDLAIPTAAKTGRAHPVSKSASTSRAPHRINLRAVAEACIEEGLDPAVEIAKALKATIPMMRSGMPVLDSDGKNIMVPLLDVDTRMRTLNEFLQYTQPKLKSIEVKMSGTLDLTSEQLDNRLNMLLAKAAR*
Ga0151515_1003335	F048255	GGAG	MAKTITIEMADDGTIMVTSSEGKEPYQCKSIDECRQYVDNMLAEEAGESPEEQATEGPEDYGQMWNEEAASRKPQPGLMA*
Ga0151515_1003339	F072099	AGGAG	MRYRNEPIVVQLVKLDMPLVELGGKRFDTLREDFYDNAVNLTCNARRFIPVFSPYDIALSGGEPYSVWS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10033

Overview

Ecosystem & Geography

Associated Families

Sequences