Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10036 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10036 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	52859
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (67.07%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

52859

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (67.07%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007581	Metagenome	348	Y
F024264	Metagenome / Metatranscriptome	206	Y
F072098	Metagenome / Metatranscriptome	121	Y
F073253	Metagenome / Metatranscriptome	120	N
F088501	Metagenome / Metatranscriptome	109	N
F095136	Metagenome / Metatranscriptome	105	N
F102822	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1003623	F073253	AGG	MSFMVVDAVTDEIVESNFEYRHHAELFIEVHGKDYPNAELIVESA*
Ga0151515_1003626	F072098	N/A	MSHHHRYVGLIDGEKMRSFHRRDELMHWLKDKPEATYIKYSVKREKKEKIDFNEYELAPF
Ga0151515_100363	F088501	AGCAGG	LKEYNFVVVEGVNRGNESKEFLYQCLVRDVIKKRIADRDKAFEFLARWEIHHKDSKLREDVLYQWQRGNRGKEDEWYDRDDKQTIA*
Ga0151515_100364	F095136	N/A	MINKQLLDALEAMCELYVPEDESLENDAVAGYAMNILETAKKIEAEYKNKPLPEDDVWMLAQDINPHDPMYPIHFARAVERKHGIGADNG*
Ga0151515_1003642	F024264	AGGA	MSTLTNVFAKHADATGTIYSGATNLGGYQIKPGGTAGEIVLRDGGSGGTVLLTLNITTNTAVIATLLPGNGIRFNTDIHVTLPTSAAITIFCG*
Ga0151515_1003661	F007581	N/A	MNMEKITSLLFPVIVSAIAWLLTSMSSMQADLIDIKSKMPALITSQGVPTDSPVSAEARAKLKEELRSQMAELNVRIRILEEHDAQRKGK*
Ga0151515_100369	F102822	N/A	MIQEPMNEVSLREYYTSYTLKNNVNVDFEKFKNLVRLIESHHGIDDDNEAQDALENIEHEIIARACRNGVCED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10036

Overview

Ecosystem & Geography

Associated Families

Sequences