NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10080

Scaffold Ga0151515_10080


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10080 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)38762
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (75.41%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F001991Metagenome / Metatranscriptome607Y
F002085Metagenome / Metatranscriptome595Y
F054870Metagenome / Metatranscriptome139N
F058557Metagenome / Metatranscriptome135Y
F062760Metagenome130N
F066774Metagenome / Metatranscriptome126Y
F078706Metagenome116N
F082685Metagenome113N
F083714Metagenome112Y
F086839Metagenome / Metatranscriptome110N
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1008012F104778AGGAMETKAWLIEETGQNGEIVWKMISFFEPDSLEWMRDLKGKRHNLTITKLVAGESKTITGVEKKYDSSKFVVGL*
Ga0151515_1008014F066774AGGAMTQDNTMGNLETWVRQLNGELNVQEIAKTKPAPIPDVVAPYSVFLRAYDKVGLCAATNKKRSSRCNIEFVFDGITRQLKNVRIINQNEK*
Ga0151515_1008019F054870GAGGMKTLLTALLIALPIMAVGGESPKLRYNWVEGKYNYAPASAKLKYNWTADKYEFVAPNSKLKHNSQSGSYEYVQTQIDPYKSDIGAE*
Ga0151515_1008030F082685AGTAGMKMNMEDHTKHVLDTVSGITAFGAIMKFLPAIAALLSIVWYCIRIYEWVSSKFKK*
Ga0151515_1008035F001991AGGAMAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSDGTPVDLTDATIDATIIRRSVTNIHDSRYGLTFDIADYTPPPDPVALSIENVDGAAGTFTLVIDESTWDVIDSDPQLDINAENCVGFSGRIKIGFPSSGSTPAQDIIIFLLFLVRSDGVVN*
Ga0151515_1008044F002085AGAAGMSNNIIPIQNTNNIRMADFVRVTTASATYRFATTPNVLTILAVDALPFDALGSLVKVGDVQRDIKSTANETSITLVGLDTALLGWVLGHDIKGSLIEMWHGFFDENNELITTGGTGGLYKFFTGYVSSFSISEQWMEEARQYVGTISVSASSIQIILQNRTAGRYTNDNAWQFWNNGDTSMNRVNFIETINYAFGKTS*
Ga0151515_1008045F000934AGTAGMSLNTILAVSESVGVTDKRFIGQTMSRNQRISTSEILSVQPFGFEMKPNSYLLLSQNKALLSSLRTVDREYESYLNFGSTGWWNYIAYQGDMSSAEISACEYQTSSANKTIVLGSLPTMGSTEYIVKTGDYLQIDRYAYIATADVQRGSGSTVSIPVHRTIMTTLTSPMEAVIGQYGITQSLGGDTYIGVTFPVILTEYPNYTLIPMTNDSFIAWSGTFKAIEAVL*
Ga0151515_1008047F083714N/AMVFNGHTIQDIDALDEATMNEITIMYADGLIGNRSLITTLGTLTAGVFNYMRPSSSMPYDLKAVIGSAYDYIYGEEKADASQSLLTFISQAPGFSIDKFKG*
Ga0151515_1008048F078706AGGAMSKLGSALGKKYEENRLSVLTRSFELGDHTFKVRVPSVQEIEAIYNYFKNPNEDKIEQEYQAMIKVFGDPEKQENTEIKDNDIVIEGRSMRETAKNKHILQYRITEYIKFLIPETGSLEDITYEDVEAEFPLSVQMTLVEKINEVISPDYKDIKSK*
Ga0151515_1008049F086839AGGMGVRFAIEGAKETLASLTLFQEQFGDKDQKSKILIPAVKEAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYILPKDSVISLVSSRPIPKKLKQQLYAKYGALKGSEYKKAKRKFYTEAGVMFDARAIANEFGTAKMSAKPYLRISLESQAQMVAAQLSMILKQKMDSYKAKNLTPTTQGK*
Ga0151515_1008053F058557AGGAMAIKRYENVDVNDLTFGTDAYGQYTTTITKKFTTRPLVSDVKNSLAITERYRVYQDLIQFTMNYTPWMKDIVDNQNLYSITWRGKDWRITDCLESNDRMNVTLMCYRSDPETKV*
Ga0151515_100809F062760AGGMKQRDWIVSKQNIPQLVIYLEELIKQGKTPQVTIKEKVSGDKRSIEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSELKTINGVQVPYVRSTTDLTVEEFTFYIQNIESYFAQLGWSINE*
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