NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10085

Scaffold Ga0151515_10085


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10085 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)38381
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (69.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012867Metagenome276Y
F014736Metagenome260Y
F028513Metagenome / Metatranscriptome191Y
F076069Metagenome / Metatranscriptome118Y
F096612Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1008523F096612GGAMNALIERMASEAGLKYTPDQADAVERLARIAAAFCIDQCGGKGVCVGSALVKHKIHKAFEMNKPV*
Ga0151515_1008550F028513AGGAGMLNQLTEYFHKMFQTFSRPQTYSSALEEYIVRNAPQTACDVDRLTRQFDLNHLRRGW*
Ga0151515_1008551F076069N/AMVMTILKSIYNFFGAMALANTAANMARNGDHKGAQRLMMEDFRGWI*
Ga0151515_1008556F012867GGAGMMKDFMYEQQRESITEDWGDEISLAILSEKLNVPRVSYRIYYSNDNLTRRIFIFRGNCTPSETEIMLGLGFTFAKDGDTENIPNQPVEEVEQ*
Ga0151515_1008565F014736AGGMNTPVVPDNQIKMWADPRFEILAEVDRLLNGNRVWKGTEWNYHPIGPVKYRPVAEKVRKALDDLKREYGVEE*
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