NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10096

Scaffold Ga0151515_10096


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10096 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)37244
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (85.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F023572Metagenome209Y
F026251Metagenome / Metatranscriptome198N
F069671Metagenome123Y
F072339Metagenome121Y
F079980Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1009615F026251AGGAGMALALNKIILANATTNTAGAYFANVSLTAANAGTVIPAGTYLVFPSANVIVTANNGSSITTLLANNTGGMILSDGVNVFAQSIIAGAGAATALTINGGLSANSTYTS*
Ga0151515_1009617F079980N/AMTELVYVTNNTDKDLYAEYNYVGYDFPVGKTVELTVPAARHMLGYGDEDKEKYLVQLGLIRLHSELEEATEKFRNVQISEEPPKKNSSLPSAVGVVPLRIEKSVGGKVNQRVA*
Ga0151515_1009637F000273GAGGMSDEFKEKHALIEKVAFAILPILFTCVVYLMSALSSLSHEVTVLNNKISLVVTSDNKQATNTGAELAREKLRQELAAEIQKNRDDIQLNRMHIAILEEKVGVSNKFKGLDK*
Ga0151515_1009640F023572AGAAGMDGGTWQGSKKEMGVQIMAYTPKAQRGLYFNINQRRAAGLPPKRPGMTGYPTKEAFIRSKRTAKR*
Ga0151515_1009655F069671AGGTGGMIKAPSPDNDTPRRFPRTLQEAFPSCPEWEEKPPLHDKVVMYLGCFVAGYITALIAMGY*
Ga0151515_1009659F072339AGGAMQRNLDNLIYDAKHSEGTFALNDAQKTAILNMVGKGCRQDTKTRLSRRLELPLSLWERYGIYSRMTLNDKGAEYICGQSWPDEMRTLRECILK*
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