NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10177

Scaffold Ga0151515_10177


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10177 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)29861
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (36.00%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F001272Metagenome / Metatranscriptome733Y
F007260Metagenome / Metatranscriptome354N
F009147Metagenome / Metatranscriptome322N
F009603Metagenome / Metatranscriptome315N
F010835Metagenome / Metatranscriptome298N
F013412Metagenome / Metatranscriptome271N
F013879Metagenome / Metatranscriptome267N
F015720Metagenome / Metatranscriptome252Y
F017471Metagenome240Y
F017997Metagenome / Metatranscriptome237Y
F028809Metagenome190N
F037116Metagenome / Metatranscriptome168N
F048938Metagenome / Metatranscriptome147Y
F065771Metagenome127N
F076018Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_101771F065771N/AMGGSPKYLTRKIQKGEIDQDCLKDSHKKLSLLNQAPSLVLSAIAKGWMSYPIKLETITEEQEVSKWIDAYDCERAYKNRIDGMTYREIGKLMGCGMNRVGAILHHGESLVLQRKIQSLGHTVVSIPSKETVQQHITNAKSKQKQ*
Ga0151515_1017711F048938GGAGGMNIEQTIEAIRVMQGYVDGKELQSMYGGIWSSVTQPRWDWPNYNYRIKPAATLRPWTADEVPLGIQARNPQYPKTRWLIDRTSSEENRKDWCEKYEHSTDGGKNWLPCGVVEESR*
Ga0151515_1017719F013412GGAGMRHLWSRGFGRLHSDAQIITTDDGKQFLIAVIEFEKRTLGNGKSYAQRVTFRSFDPEDMDAVNLLTEGTHVMFDGDCDAVADKSSTGWWYANPRVTGRISEIIPSGHES*
Ga0151515_1017731F010835AGGAMNAVALRTERALVDWLAAEDWSASPIGTPTCLTSYGHGAFADQDLEDSMPAFPRIVVRASTAVPVHPLDRTCEVDVTATLQLSADDTAEYQLLAIVQIFENLLQYLYVDGNIAELNADDTNPSGGYNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*
Ga0151515_1017732F013879N/AMNPTVKVDTSRFDAAWKEYLPKTKRSLADAVNARTFYLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGALRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVSMHRGSSAYAFNAKAGFNPSSHVRMNIGLADNQIGNVEAIYSRAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0151515_1017733F007260N/AVNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGVNADRLLQESGSLLLQENTDRLLLTFGKMLPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0151515_1017735F017997N/AVNFIEQIVTALLKWLTSFVQTPPTVEDAKRDPDLKKKLLDRIAKSDR*
Ga0151515_1017736F015720N/AMKNTKTTLAGVGAILIAIGGALKAAFDGDPTTNLDIAATIAAVTAGIGLIAAKDADKKPE
Ga0151515_1017737F037116N/AMEPTNSSTSPGVSLAAAAGATAVSFIPQLTDWVRLITALIGLACAIYGAFRLFRSK*
Ga0151515_1017738F001272N/AMIKIELTQEQFNTVLQLIDIAIKAGGYQNAKVAVPVVELLITQAENPKPE*
Ga0151515_1017742F009147N/AMAVQADISTEYSMGREGFELFTTTAAQTGAWSGLIPIEPTVFTSITGNRIAGTWTSKTIPAGIPLVGNITGFQISSGSVVAFNARA*
Ga0151515_1017746F009603N/AMESGNVVRSTSSSDVSVEFAEPGKATAAPIEMLEMWESLLTDYDYAVTLLSGDGIASPTDLQIYNKMLTAVLVSTTRYYGDFTQFRREATTRMS*
Ga0151515_1017748F028809GGAVEILNCQKPSGIEALRQNRIALKAIERQTGFEFLGISNEEPSRIDGFIYDPAKGIIAGSYEVKTRNYGLIKLKTTFGNRWMISWSKLQAALEVSRHTKLPFFGILHLHDDDSVLMVEIFNRSASWAANHQITDKTVNGRSEKVALIDMSGAAHYKIKSGQITEELF*
Ga0151515_1017749F017471N/AMAAINQQQPAPELAGGPYRPPEAATAINAALATEDSPQGAYERQKKIERAAYDLAVEALKSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVAQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS*
Ga0151515_1017750F076018N/AGDRAGPIILCERTPYCSTNPMSLSTDYLLLNVGHSTLKWHLDRIKTGSFTVDQVASFYAPDPKQPTYGTVKKGLTELLKMRPENMPIQLR*
Ga0151515_101779F001259AGGAGGVKDTVAFIYVHRQNGLIRVESLETAKHIDGKPEWKHVSTVNAHVVLEQILRAKGKDRNQIIKHLLE*
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