NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10183

Scaffold Ga0151515_10183


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10183 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)29299
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F002933Metagenome / Metatranscriptome519Y
F004432Metagenome / Metatranscriptome438Y
F005476Metagenome / Metatranscriptome399Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1018314F005476N/AMSLKISHVETNYVQQVWPMVKPFLEEAMVKGGDFPDWAQDYTVDHIQSFLTNGAWLLVVAVDEEGTVHGATTVSFINYPMHRVAFVTAIGGKLISSQNTFDQFKALLKLRGATKIQGYGRDAIVRLWKRYNFEPRNTLVEVLI*
Ga0151515_101835F000332GAGGMRWLILLLLLGLVGAVAKNGCHVREFYGIAYTVHDPTERHREMMAWLDQNAGRCKSTEYLVIWNNLSEWAGTADSTWLRNKVVHGYKDALEREKK*
Ga0151515_101836F002933GAGMIPPLYKWYPMVQPGGEPNRTDALERRAEKLTEDYKQALKMKKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKIDILA*
Ga0151515_101837F004432N/AMVTAKKAPAKTPAKVAPVKRRTPKPKTEQTINVSVAAPTASKPEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLIAPARSLMKDVDGLVVLVHKANLTINSRTTVLALNADGSREKAIEGSVTSLFNASADRNGAMIAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPEMGKFAGYVAIGFKDKPEDIAALKTRINLAATDMSEE*
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