Scaffold Ga0151515_10238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151515_10238

Scaffold Ga0151515_10238

Overview

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10238 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	25641
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F094997	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_102383	F094997	N/A	LIGFYPYRQLLKGWKVITSNLKQVREAVTKYAGSVAKGAENARDEMMVTLIQLSKEEIKGRRPVGQKATAGAPPMNRTGNLRRSIRGEKRQPGFAKYEAIVGPTIIYGRAVEVGGEFSPNSWRGTSAVKGFPYMRPAFQKFRLIAPRIVKKHLSVGNR*
Ga0151515_102387	F002722	AGGA	MAGRVGVRDTLYQFLANPPIENLNVIHTSFPKRIQFQENGQAGQLTRSQAIIFIQSENETRLAIGGATNGWKRVDYSVIIQIFTHSLQPDARMSMADFDTLVDAIKIRLRSDHNFGDQSGTLVWQGAEPIINGSYGEPATTNEGATEIYAELQFDVTEMIQA*

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