NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10252

Scaffold Ga0151515_10252


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10252 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)24991
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (52.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007911Metagenome / Metatranscriptome342N
F009066Metagenome323Y
F024499Metagenome / Metatranscriptome205N
F057981Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1025214F007911AGGMAAVTMLDRLIEAAFKELISPVVTAPAYHLSHDQSENMPPSIVIKASLGSEEPVRGSGVFSVPVEIIFDESYDDATPASHSAQCSQILQCFYDATNLSTRLNATTAIGSARTYSAKLESSEASADNEERTFTQNYKLSVIAYPGSIAS*
Ga0151515_1025217F057981N/AMNDNLEQDLDEAFIAPDTFFKGDKLAPYTEGSRLLMLQVRDEADSAIYFVWSFVYIHILLAQDRRAAIKLAWDRDAFREKLLDWSENMTEEDRTTASLVCSSVLGAANKARVNVIPGALAEAAPPNA*
Ga0151515_1025232F009066N/AMSEEHEKHLAGIINDLARDVSKKYRKGQEEHGGALWRRPVWKDAWDEVLDLCTYVHTLRLQLSVIAELALQGAADDSLAASQSRENCRQILAVLQGFPSAQDKK*
Ga0151515_102528F024499N/AMSEFTEALKESLAVLHGQTGTTVTIGSTAVTGILSTITRKENVELGGFDLDLNSTFTIDISSLATAPTIGSVLVANSVSYRIVTIDTGTGSYVLGLREK*
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