Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10269 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10269 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	24211
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (41.86%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

24211

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (41.86%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F003687	Metagenome / Metatranscriptome	473	Y
F029405	Metagenome / Metatranscriptome	188	Y
F051883	Metagenome / Metatranscriptome	143	Y
F055681	Metagenome / Metatranscriptome	138	N
F077223	Metagenome / Metatranscriptome	117	N
F089995	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1026911	F001190	N/A	MTSTPAGQDTGDDYFDINKFEQLLNRLEASKGRQQRQKSLEGRRDIFATGLGSMMSNF*
Ga0151515_1026921	F001806	GGA	MDAGVRQKRIEALEKIKEHALTRAKEGADSFEVRDFVTSAKKELAYELPDEEAFKKAVRATQAYQGSKAN*
Ga0151515_1026927	F003687	AGGA	MSPSSVEHLLTQKVRLLARRESPAIDKELEDLRQAALEVFFQWQDGLVQFQDLTPFVAILEKKVDLNRSLLKWEQQHIS*
Ga0151515_1026928	F051883	N/A	MNYPDLQHLTLVGRIAALTVITTEDDRECLVVTLYHRITTDTTITVKFLNSNGLLTAHTNNNLVIGQELTVTGKLTGIRAFYMKDDVLTPLKQPEFQMKVIDYAFGSKPQPKTQPEPTPTAEPALEPVAF*
Ga0151515_1026933	F029405	N/A	MNFIDEQRNADMLDALADIAYEQEQAMRESEQSEWDGIDEISDAERNACDHYNERYIYSYSYP*
Ga0151515_1026936	F089995	N/A	MQMVAKMKESADKHGVGFVGGFISPDGKKFMMTNMSQEDTQFLLPDDLK*
Ga0151515_1026939	F055681	N/A	MIGFSLEFKRWYVVVRGPKGRVYSAFGFAKQMPVFTPAKTMTLQEYIDDYNDAIVFTDQDGEELMRI*
Ga0151515_1026941	F003601	AGGA	MTEHTDEQLLAMAMANLGEYIHDNSPHYILIEKDPRNDEDYDTWEVGMEPLPGDHTWRSTSIDVAVSPIEPTD*
Ga0151515_1026942	F077223	N/A	MTFLAAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEVRYVRNSEQLALQGVPQPDGSWKYVEPNGCVHTMSAERAQSFMQQTHEHANIMCTMLDRLREAGLMENIVDTEAQAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10269

Overview

Ecosystem & Geography

Associated Families

Sequences