Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10337 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10337 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	21127
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (59.46%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

21127

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (59.46%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F011208	Metagenome	293	N
F011649	Metagenome	288	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y
F039993	Metagenome / Metatranscriptome	162	Y
F057977	Metagenome / Metatranscriptome	135	N
F065527	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1033710	F039993	N/A	MKLALSWICYHIGNITSLTLMRLGHGYGFYNRMMIWSSALDEHGKIWKDVK*
Ga0151515_1033711	F003304	AGGA	MKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIQADEAKLVELGR*
Ga0151515_1033713	F022371	AGGA	MFCLLDLAGIVWVISWFLLYSTITLSALYCAGYIIFKLIEIIRKELDK*
Ga0151515_1033714	F020665	AGGA	MRKRKTGRSIKLVKVEDYDAVKILVDVDDDLFNAMADAGRQHIVKDKVACFEYALNKALLELCEEIK*
Ga0151515_1033717	F004010	AGGAGG	MPLGKDVSKNMSELARDNRKKGSERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSGS*
Ga0151515_1033718	F002826	N/A	MQVEAKDRLKWAREILSIARDKLVVERDRASHGHAIDMIQIITMVDAAALIAKEILEEDEKQG*
Ga0151515_103372	F065527	GAG	MKAIITITLTAMLMASGLAEEEDEIGIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGGSSSWKNGNSYFDGTKGSWVTGKPKISD
Ga0151515_1033724	F057977	N/A	MNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPSVWDEDEVDDDIQ*
Ga0151515_1033726	F011208	AGGA	MTEDEIIKAYLSRLGKKGGSVKGACKARKLSREHYQTVAQAQRERWQKWRTENGRPAIKR
Ga0151515_1033732	F011649	N/A	MLEVLLMDEASGTPTAPEKAKNGRDIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDIQLAGEKSWQAKAWILERGYNWAQPSARLQVSQDVTHGISGNLAQLLAGIAMKKKAQVIDAKAVEVKTAIPIRDNSYCATDATQTIVTPTLEKSVKTRHRAMRRRKPRKESLAKYTTTPPASPPAPI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10337

Overview

Ecosystem & Geography

Associated Families

Sequences