NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10383

Scaffold Ga0151515_10383


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10383 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)19855
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002098Metagenome / Metatranscriptome593Y
F005234Metagenome / Metatranscriptome407Y
F007581Metagenome348Y
F017559Metagenome / Metatranscriptome240Y
F046241Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1038310F007581AGGAGMNMEKITSMLFPVIVSAIAWMISSVTSMQNDLIDIKAKMPILISEQGVPTDSPISAEQRGKLKEEIRQQISELNVRIRILEEHDMQRRGK*
Ga0151515_1038317F017559AGGAMIIDAKELSNGLIECRYETHLECANCGMEVDALEYSSGTCSDCGSDWDEKRHIAVHVTSIPLSGQTF*
Ga0151515_1038323F002098AGGAGMAYKSAADGITKQGKTKGRNLGDDGAKVGIEKGPKHAGSKGGKKNIDMKTMGRNLAKVAAQKKG*
Ga0151515_1038333F005234AGGAGMMQTDVKSGTAAADATTTISAGPARIKGILINYTAATTLTINDGTGGTARFTYTAPAGAANSVYVAIPGEGIRCDTNISAVASAGLTAQVFYG*
Ga0151515_103834F046241N/AMKQVQIVAPEYIYTIWDVVEPMLKPAFINFDNADYGIEHIKVLIIEQLQYLFVVVEDKKIIGAFTVEVINYPNHRVAHTTSMGGKGLFNIDTVKQYEDWARLQGVTKIRAYAKDSQARLFKMKLGLNAVTHVVEKTL*
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