NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0151515_10568

Scaffold Ga0151515_10568


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10568 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15839
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006539Metagenome / Metatranscriptome370Y
F010617Metagenome301N
F046377Metagenome / Metatranscriptome151Y
F076089Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1056817F010617GAGMADTRRRRKKYAKRRVRKSPEPLTKLDQHYIAMNEIYKAARKAGFTESCALYFVSDRATMPDWVIGDGGIIPSIDPTEEDED*
Ga0151515_1056819F046377GGAMKIQIDLKAADFEQLWLNSMEWSNNDWQKQSDRFEPAPLFTWQYAYWFDNYAALKMAEGFINSLGKNYAIHSDENTGDWLMLTNYASPCHLRSKLVNA*
Ga0151515_1056820F006539N/AMIETTAPWIVLYSILGYFIVWGIVATIKDNAFQAGYWKGRKDGYDMHRRITDGKIDVNNN
Ga0151515_105686F076089GGAGMSYNGLTEEEYNFLVKIGQITDEPAAVKKPAAKKDEDNE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.