Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10595 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10595 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15417
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (91.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15417

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (91.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005233	Metagenome	407	Y
F023041	Metagenome	211	Y
F067421	Metagenome	125	N
F085230	Metagenome	111	Y
F090308	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1059513	F090308	GGAG	MYETYIKLTPNELHNRLVERKLHESEIERIKAEVADLKESLRVSRITKTQREAEWLKVLQPLRYEINNAKVGMKYGGEKVSPERALAFSEYIRVMEKLLAMLDAPFKALDHTPIQIARDKGLPNDGEHWTDWIPARVKDKVTILFNEITITPRGKRKIPFQRTMLPDQFNKSKTRLLTKTRKEMESIMRQADINPTVARLDKIAKMKRALKIIEALGNNEAVPATWTKLSMEGG*
Ga0151515_1059517	F005233	N/A	MLEHLINGEFEPSVVDMTTATPLPFADAAPADIIDAQVQTANWLKELELDDDEAESKADAQAARNSFASLVTGQPPQNTQQALANIKAPAAVQHLVGMLTAYDWAFVEQARELRGYAVAKILDEVKHPDARIRLKALQMLGTVTEVALFTERVEVKKETMSDVELETRIKDKLNRFMGVIDVVDVTQEKTDEA*
Ga0151515_105952	F023041	AGGAG	MNNPPYDTGKVKIGLLYTQPPPECTPESDWVQGVLLGDKRVMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA*
Ga0151515_105956	F085230	AGGAG	MKVKELIAHLQQCDPETEVYTFDDHEIHAIDYVDASMTEWVHLNLGELQ*
Ga0151515_105959	F067421	AGGAG	MRVVRIRIHGRYTAPFNNPFTANAVVMPVELSDSMRDEVLKKYKDAHYVFDAGNPIVGEHNTFEVYSFDVIDDMEVSLA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10595

Overview

Ecosystem & Geography

Associated Families

Sequences