Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10670 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10670 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14418
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (65.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14418

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (65.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F023058	Metagenome	211	N
F027779	Metagenome	193	Y
F041766	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1067014	F011919	N/A	LDAPRLQGLLKSKANQMSDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQSGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR*
Ga0151515_1067015	F000722	N/A	MDTLEPSEVTEEPYPEIGITEETRQMYPENYSDKYNKVFKEFVDDIMKPPRPIDRLDDHQILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVIRSCSK*
Ga0151515_1067016	F041766	N/A	MVEVPTIGVQNMTEPKVFIYEVGRCSMDNGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELSFQQ*
Ga0151515_1067017	F027779	N/A	MDEWIRQAIRYSDGAFYNFGSWGIRNMRGSEELSVHACGRAVDLSFAATDKHPTANRKGMVAFLNIVTANANALGLECVLDYLPKPFGRGYRCDRQAWSKYSKPTIHGAPGGTWCHFEISPAMADSPNLVKQAFQRVFAEIPQ*
Ga0151515_106702	F023058	N/A	MAGVAVVGSGNYDLEIDTGYMWDAFTLDDDLKGELNNMEYVLDGVSQYASVMDGTIGLTAKRGRQNTADQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANDQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEELSSTRFGNLLDLPEVAYTGTRSIETGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTITFQKRLGTTLGVPVAEFHDDNTEIGYSAIDISFQADTVVNRASIQHAGASSPQVAEDLVSQAAYLVQTQSITDSLLHNDAAALTLAEYLISPDPEARFNFLGTEFIGTPSLDQDILALLDVGDLINIQKSITTSAGPSQFAQDLTIEGLEHRLTLSAGHAVTYYTAPTTIVYELILDDIVYGTLDEENVLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10670

Overview

Ecosystem & Geography

Associated Families

Sequences