NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10769

Scaffold Ga0151515_10769


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10769 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13397
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037622Metagenome167N
F065530Metagenome / Metatranscriptome127Y
F069832Metagenome123Y
F104726Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1076912F037622AGGAGMTKEQILKEYFSAMGRKGGSVTGPTKARKLSREHYQIVAQAQRDRWDKWRLENGRTAIKRER*
Ga0151515_1076915F104726AGGAGLKTYLVEVFDKKDSHGLSMPVLQFEATCEKEAHEIVMESLGIYMTIGEAS*
Ga0151515_1076917F069832N/AMDDLPPDKAKNGRPTAYCDEIATKIIDAVRSGLTMERAAELVGMNPGTIQGWVTKRATFGRAIKKARREHEISLLRSIEIAGEKSWQARAWLAERVHGYAIPSARLQVSGSVDHNAGAGFAQLIAGLASRRAEKKAQVIEAEEIKAIEQSKTKDNSYCPTNEMQPIVTPTPGQNEEEPRRSRHVRMKRRKPRSKAIDTTTPPAQPPAAI*
Ga0151515_1076920F065530N/AVIGAIFQIIASVLRLIPGWREKRIDKIEGEWRNNHQAIDDDLGPKPWWLRQYNDTVHEDKRSRDGSDA*
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