NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10798

Scaffold Ga0151515_10798


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10798 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13049
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F002149Metagenome / Metatranscriptome589Y
F003304Metagenome494N
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N
F041081Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1079814F002009AGGAGMTAPTIQEMGNAAQEIVWRVMGKGSDKSEYGDWLIKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIKKEVPRL*
Ga0151515_1079815F041081GAGGMIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYMEHCFAKVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ*
Ga0151515_1079817F003304GGAMEGRKMKQALVTQSFGDEWRKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIANDCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGIIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIQADEAKLVELGR*
Ga0151515_1079818F021063GGAGLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYVLPT*
Ga0151515_1079819F020665AGGAMKKRKTGRSIKLVKVEDYDAVKILVDVDDDLFNAMADAGRQHIVKDKVACFEYALNKALLEMIEEIK
Ga0151515_107982F002149GAGGMTAVEYIEKSNVPEAMWPNLADWFGWFEKQGMVGIVEDKDGIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWQRFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0151515_107985F025460AGGAGMAVLDIPAMMDMFRQDELQKQAVAEAQRKQALEERTMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGNTITNEQSLENEEIQSQRDAINERLRKLSTERLKQELEIAKGDTRTGAMELGLGLVGLKKRSDVMKELEAERGVLQGRIAELGFNRQTGQMETETPEGAPAATEPSAPAIAAPATEQQPAQPQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ*
Ga0151515_107988F030376GAGMKAITMIILTAMLMASVMAEDEDGDAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTEGFYFKSGSSVVGKDSTFISKSRNFFYGTSTTIKAGSAYMNEGAVWVGSQEEDND*
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