NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10852

Scaffold Ga0151515_10852


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10852 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12339
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002843Metagenome / Metatranscriptome526Y
F005024Metagenome / Metatranscriptome414Y
F005633Metagenome / Metatranscriptome394Y
F006107Metagenome / Metatranscriptome381N
F006262Metagenome / Metatranscriptome377Y
F009398Metagenome / Metatranscriptome318N
F010611Metagenome / Metatranscriptome301N
F015720Metagenome / Metatranscriptome252Y
F019637Metagenome / Metatranscriptome228Y
F032255Metagenome / Metatranscriptome180N
F038227Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1085212F038227N/AMISLGIALNRLVAGQSGGTDAPVLRRDVLQEDEFFVLQEDGTGKIVITFGTFDSLLREDAGFLQQEDLFKLAIQSN*
Ga0151515_1085214F005633AGGMRIATTISVDKAGKSKIVAGPEVDAAAQRVDFNTAKISEGSKLILWIQGSIAPKIRKG*
Ga0151515_1085217F006262GGAVKIRPEVFTFTVAIKRSYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVIRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLDDYDLAVDYLEQDGITTPTDAQIYNKMVGVVLIAATSFGGDFSNFRREASYRGMS*
Ga0151515_1085219F010611N/AMTQRAYADHAGITHGYVNYLVKKGMPMDSIEAADAWRQKNVRRRSDFTKNLPLTPDPTAIKQDGPYRPTEASNPIDTATAATDSPQGAYERQRQIERAAYDLAVDALREGRADAGRLVAIHAAAAKNLTSARDEVIAQAEKERRLVSGDWVRRVMQEHDGSVASLLKSMPKQLSGRISPHDPEHCEKELNRWVQEVALKTLHNTDPWKS*
Ga0151515_108522F032255N/AMYGVNNTTAVFTALASIESYDLTHEADTEEVRNSGGEVVGHIGYNERVTLNLNLIPSGVDATAALAFCSLAPVNGTVEITGAPIISMMGTANILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTGAAVALNV*
Ga0151515_1085220F019637N/AMQPNHISFLVDQYGVANVAWFIRLMKRGTLPEQLAGYCVPNQQDSRRDGVFRALQYAATVPNSMLPPEILNALKP*
Ga0151515_108523F006107GGAMNAVALRAEKAVADYLAAADWSASGSGTPTCLTSYSRGLYDDPDLEDVMPNFPRLVVSTNSARPVQRTDLTCEVEIAVELQLSADDTDEAAMLTAVQVLDNRILPLFDDAGASALNAAANDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI*
Ga0151515_108524F005024GAGGMTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLMPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSTIYNTAMQKAMDDELVELTSHMTEAMLANGKVLEDNGIDIK*
Ga0151515_108525F009398N/AMTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVTDANTPISGGFQDNATSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR*
Ga0151515_108528F015720N/AMKNTKTTLAGVGAILIAIGGALRAAFDGDPSTNIDIASTIAAVTAGIGLIMAKDADKKPE
Ga0151515_108529F002843N/AMIVPVNIVAVQVNQNNSLFVTTGVDYDNSGTIVGSEITAQYTLNPGDSLEGQPTEVVNIANALWTPAIVAAYKLANPVVETVQPTE*
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