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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011114 Open in IMG/M |
| Scaffold ID | Ga0151515_10862 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12246 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Yellowstone Lake virophage 5 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042796 | Metagenome | 157 | Y |
| F064499 | Metagenome | 128 | Y |
| F073261 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0151515_1086211 | F042796 | N/A | MDEKGFVEVMPAEKKPKDPRMEKIDAQFLPELPATILILGQCGSGKSSALWSMMTKGYVTGKTKKKSIFDEALIYIGTLDAKASFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIIFDDFAGASLMRKAKVGGAPPIEKLCLTSRHESNCTLFYLTQFYKNTGFTSPAVRANITTIILYKMPVNEVRKIAEEYAEQYDVDEFIGHYDRAMARRPYNFLVWDRRRPMNADRWTEGFTTPLPPSKKLTEMHKLMGRRASVSVSEGESESDKEPN* |
| Ga0151515_108625 | F073261 | N/A | MEAVLNNPKTSFLQNPKTFSEIQSQSGMSMSAMMKHIGGKMRKQKQKGPTDDEKAKERLDAMDSANKK* |
| Ga0151515_108629 | F064499 | N/A | MPTEAHVINVKERTDRWEAFQSAWKDQPITPIRRDAIKPDGVEVLDVYHAVFLKHREILTTAQKLGEKYVLIMEDDAVPGKNFARHWESIKCCLHQMDDWDLFNGGMLMIRDCVEKVIRLDYPDGKDPTMLLGVWRGAMAHMVYFKVDSALKKMEDWEAEGKPMFDGWYSHKLNTMACIPYLAQQSDGFSDSAGEHREWSQRFQYEEDMMKHALRDFMQAENVVPNLKHDDPRQTILRERDRTIGVDAPVHEKCDHETCRFPTSSCPAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |