NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10870

Scaffold Ga0151515_10870


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10870 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12148
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004664Metagenome / Metatranscriptome428N
F012040Metagenome / Metatranscriptome284N
F017632Metagenome / Metatranscriptome239N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_108701F017632AGGMSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFVQKDYSICVTITADNDQVTADQTNVTADGWSEDCYGPSSLTGVFQCALPYIADNGRTFILMLISGKVWLYDCEQNSAQNMSVTPSLENPSNILDGWMVQAENFVVIQDGFSTPLIFNGTNLRRSTTDEIKCGKMM
Ga0151515_1087011F012040N/AMINWLRGSKKESPKNLLELPDINLSDWQTDGQQAELAQVFQNPVLRMALRIVAESMPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVTETAKEPEATFDKQY*
Ga0151515_108704F004664N/AMSNSTGYRVLNEHMVIPGGWHYRVPETGIEIMGGSWPQLHEFVRNHYTANAIPIPSNLDTLITEYACRNGADCAYNEVELPKPEGRKSLQIGDVIRFSMSLLHGLTVGGGKVSQEEANRRASICSGCRFNRKPLGCTGCNARVLKEAVKTFSQHGSTPYDEQVQSCEFCGCFIRSMVWFPIETLHKFTDATENENLPAHCWKKRPCTET*
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