Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10872 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10872 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12122
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (64.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12122

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (64.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F009066	Metagenome	323	Y
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F031026	Metagenome	183	N
F043284	Metagenome	156	N
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_108721	F031026	N/A	WNAGKDCETSMRGGRNALLLILSLALASCATVSQTQDGPPPSPDTISYFIYAWDKAERTNKPCPAPYRDLYAQALKALSDSLAETERERARK*
Ga0151515_1087219	F016963	AGGA	MIDILPDQTTHEQLLNRVRALARELAEAKAALAAAETRENVLIDRIREGL*
Ga0151515_1087220	F005502	GGA	MVDCRPEAKRIDVKKIKVRITGYWPGEDEWSSRFQSSTGTRLRAGRHCAVDPDIIPLWSKIKILNGKREWVAVDTGSAVISKKASGGKLPVIDVFAASEAQFNAMRLPKVATVEVTRAN*
Ga0151515_1087222	F020510	GGAGG	VTLQKLLTMFSARVIGTYTPAQYAQQVIIARKNRMRWGMGQW*
Ga0151515_1087228	F043284	GGA	MKLKAIVTKLNDTRDKALELVGKTIGLAAEAGTIIQQARTDGENVRDICEQAGITEEVGRRYEKVAAAQHKLTSGQADAGEMRQTYLRIGMLPDPITASVPADPKPFLWPVIKACQWLGNRGAKYISQDAELREQFIREAEPIVRAYNELKGAE*
Ga0151515_108723	F009066	N/A	MDVTMKAEVMSPEHRKHLATIINDLTNDVSAKYVKGQLEHGGALWRRPVWKDAWDEVLDLCTYMHTLKLQLGVIADMALQGASDESVAAATSREACRQILAVLHGLPGAEDKK*
Ga0151515_108726	F043823	N/A	MKKVKTNLTIDPKVKRKGEMLAKKNGLSFSAYVTTLLVRELAESKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10872

Overview

Ecosystem & Geography

Associated Families

Sequences