NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10930

Scaffold Ga0151515_10930


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10930 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11440
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029722Metagenome / Metatranscriptome187Y
F033407Metagenome / Metatranscriptome177N
F077243Metagenome / Metatranscriptome117N
F082574Metagenome / Metatranscriptome113N
F097190Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1093014F082574GGAMTDKEKSYALLRKLADETTYVMVHPNELRVLLDDLDHMRLRVRIAREELSDAWQLYRGDMA*
Ga0151515_1093024F033407N/AMNLNTFEEGLLDSIQTERCKKLLWSVIQLAVDDACKAPYKTRPTDETITALRFLFGDLYESGLDNYLMWLDVDSKEFKRRMVNAMFSERHDKFTDFERRAFRANYNWYLRNEINTND*
Ga0151515_1093029F029722GGAGVASWINLIKQVKSSDIEEITAAYEKALPFVVQDWAKMILKLAKSKRLPIIEKIDRIHGQKIGQMVRDEVTAQHLSLSQKTSSQQSPTYRSK*
Ga0151515_109307F077243GAGGMNLHEAAAMSAAQDVIEQAQTTSALEQRALAIVNLSIELHKKAIDLRLQAEEILKEIRFQ
Ga0151515_109308F097190N/AMTMTDEQKKILAYLKKRKTPADLKSVRLQTKIDKQTTVNCLNALLKKGCIKTSFRIDPFTKERVWEWVKDEYEAKKVSRPKKKFKPVLAKQEEGVDISFFNNPFNLRVA*
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