Basic Information | |
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Taxon OID | 3300011114 Open in IMG/M |
Scaffold ID | Ga0151515_11064 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10323 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001326 | Metagenome / Metatranscriptome | 721 | Y |
F016523 | Metagenome / Metatranscriptome | 246 | Y |
F036685 | Metagenome / Metatranscriptome | 169 | N |
F044371 | Metagenome | 154 | N |
F079819 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0151515_1106414 | F079819 | AGG | MDAKTYIYEVYTSNLDSGQQVMVQIFRDPLDGRVLHSQLAFKDVSGSWGIPYQLEKK* |
Ga0151515_1106416 | F044371 | AGGA | MGNNEIDGLYPETGITEHTRAMMGMIDDLFTPNHIKRSKASHLYHLVGELEALRDDLRRMEDPRANFLQLAITELSQLII* |
Ga0151515_110642 | F001326 | GGAG | MAVYSVTQKYLLDNYAVLQSLTPTEIAVGQSITVASVDATFNGTFTVRALPQYLYIGIDTEGDLLYDINVPIANQVLYAKTASNVERTAATGTITYTQTCTWVTAAQLITYLGVQITDPSDDYTLITQAVSAGNNFAYRRRQEAGYIDSLTTSPGGDATLGTLMYCAALWRSRGSLENTFASFDGMGAAPQQSLTPIVKQLLGIDRPACA* |
Ga0151515_110644 | F016523 | AGGAG | MYTIISPRLGNPGDQFIPEEGVNIDALLDGGLISTDSVKKSSKVKSEPKEQ* |
Ga0151515_110646 | F036685 | AGGAG | MKVKLSIDLGDGKPAREMVTNMLAIVDWERTENRRSADGKGIGFSDMCCWAYTLCKLAGDKVPANWREWVAENPNMTITPINEVADETPFIEGLGGEASAKS* |
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