NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10037

Scaffold Ga0151514_10037


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10037 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)58375
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (79.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016248Metagenome248Y
F036230Metagenome / Metatranscriptome170Y
F068451Metagenome124N
F072087Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_100373F072087GGAMIVYDPRDMEWPLYCNLMAELFSANDIGTVPEERWRDWVDGMNGIGFFAQSAIPDQRLFDNWQDWAQQMVGIMNLQA*
Ga0151514_1003743F036230GGAMTQDLKIGDIVQVTPTKETFGACMVVVTELKSFGIQGYVQSAGVPGQQYIRLKFDEFEFTGGTAVWIPND*
Ga0151514_1003748F016248GGAGGMKEPSQLARLLLGQEHVKFFTQQEFDSSLAIAKAEIMTVAIETTKRAIMIEREECAKLADECVDIEKLGDAIRNRIPTQRQ*
Ga0151514_1003754F068451N/AMILLPQQSGFNSKEIIMTVATTLKIVDQLGLIQDQIDALNEQAESLKDQIKLLGAGTYAGTMYVTIIKHTPEKKSTAWSAVAKELNAPADLVAKHTKITKDILSATTEPLSN*
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