NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10095

Scaffold Ga0151514_10095


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10095 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)37964
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (86.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F019099Metagenome231Y
F023293Metagenome210Y
F039032Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1009518F039032AGGAMVTLTEVDHKIDAHVDICAVRYEGIEKETRGIHARIKRLEQILITGGGAIIMMLLSIIVKGH*
Ga0151514_1009521F000273GAGMTEKLEAKSQLIEKTAFAVLPILFTCVVYLMSALDKLTHEVTVLNAKISLVVTSDNKQAVNSGAELAREKLRQELEKEIQHNRDMINENQKRISIIEDRMARK*
Ga0151514_1009525F019099GAGGMIVKGKIVKDWDKSQISTGYQKPNQFRVITWDMGRFQGWLLGQTPLARNLIEKVIR*
Ga0151514_1009526F023293AGGAGMKYGILDDEGRVVRWVWDKPSYSHIVQKRPRKPKLDLSSVPDAPF*
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