NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0151514_10134

Scaffold Ga0151514_10134


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10134 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)35099
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (73.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010821Metagenome298Y
F012212Metagenome / Metatranscriptome282Y
F025282Metagenome202Y
F027776Metagenome193Y
F044360Metagenome154Y
F057986Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1013414F010821AGGAGGMTDFTFSPADFAATEITVVANTLDAKQYLAERYGFGCVSISIRKSAAPEFADSFEFQGLSYQ*
Ga0151514_1013416F027776N/AMVVSMMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGAETAEKRLVAELEILRGELKSLQKELLWEQTK*
Ga0151514_1013418F057986GGAGMIETIKQLLATPTPLEMAARELVEAQRSKLEAESAREYAYHMVQYHDDRINRLRERLDELRGEAV*
Ga0151514_1013425F012212GGAVSEFIASADSPWPNTDTKTVLVCRIPKKDDKPSANEFIDKDGRICRWVVVNKRC*
Ga0151514_1013432F025282AGGAGMSYLATVTHDTQSNTLEAAWLELVDEELKRVKCRNYSAEQKDEFLADCGDDGQKYITLAGW*
Ga0151514_101346F044360AGGAMASKKLLETDVYPSDSFKVWNQALAVDVELAKLDHEKVYGIGRVLELVDAEFRRKFAAQRERIAEAVQARDEERLERASKGLIAAYKALTRWAEGVGLERMPKIDCMEHRMQDGSLMVVVRQEKDRIWYEQFRKEPGPRSIWTLEELETVMNAPTLKQVREIKAALPGTKMVPVQATGLSGFENMENDIDISKPYRGTKLFDTAAAEGARSAKR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.