Scaffold Ga0151514_10327

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151514_10327

Scaffold Ga0151514_10327

Overview

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10327 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	21482
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (84.38%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F071151	Metagenome	122	Y
F103126	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_1032719	F071151	AGGA	MNCCNANGQCEQGKDCPIRKQRLKEINDAYCNGYKDAQLGDPIDDLADTFKALLTMLTAVLGVWIVCLVIWGK*
Ga0151514_1032721	F006696	GGAG	MKFIKFLKDYYRDLTPAEVIQRELAQAHLDRLEAEGAVEYAQAVLDLNLGRIERLNTRLGEYK*
Ga0151514_1032723	F103126	GAG	MQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWVGAEKLTSTRYKQDYDNLAQHCKQLELEIMELKR*

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