Scaffold Ga0151514

Basic Information
Taxon OID	3300011115 Open in IMG/M
Scaffold ID	Ga0151514_10669 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011115 Open in IMG/M

Scaffold ID

Ga0151514_10669 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14462
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (54.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

14462

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (54.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F012113	Metagenome / Metatranscriptome	283	Y
F035669	Metagenome	171	Y
F049401	Metagenome	146	N
F055438	Metagenome	138	N
F060551	Metagenome	132	N
F063298	Metagenome	129	N
F086801	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151514_106691	F063298	AGGA	MSNDKQTGIELKKTITLLEKAKEETVEHMGECISLAADAGDIIASARKEEADLDTILAIAGINGEQARRLERVAKARPTLSAPAPGQLKQLALWAGILPDPIENSTPRPERAWHHYIVLAKQWIAKKVVDQWSPEQRSEFIDEARPIAQAYKDAGGEL*
Ga0151514_1066918	F005702	GAGG	MVIIFLVTFFSLLILQGVRLLAKHIDQQNYERRNFYLWVAAELDKMDKIVAEGNRPKEESIPSNNWAGRN*
Ga0151514_1066919	F005846	N/A	MNNTQMISPKPARPVPSSVPASHIEFAEGTAIEGKLNGWRGLFNQKTGIGYNRHGKIASNHNLMVERLANAGIKAPYIDCEIMGMRTKTGKGTIVVMDAFDPANPKPYSERMKEIEHLEAVTFDVASNKLLRFVRLAHEKINSIWEEMNFQNNKAGEVIWEGFVMKALDDRKYPFITNPNYCSPSWQKQRIRW*
Ga0151514_1066925	F086801	N/A	MTGLKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQVKIILELARLGMEDEDLCATTARDSCKRIFDMMGGIK*
Ga0151514_1066927	F049401	GAGG	LRELLGLFSGGLKIVLRQGLKGMMQRLNIAVGLGTLTLILGGGLALSSCASTNYTYTAPSPADIPALIMEWDKLERTIGQVKPEFREQYAKALKALSNAIAEQERWRARAENK*
Ga0151514_1066928	F012113	N/A	MQQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDQPEKFLQSVVDVLSKFSKK*
Ga0151514_106693	F060551	GGCGG	MKAEGQDPADSIRASYTPDMAETIDTLEDQMRERLSQMSAMNPALGLDQLAKMLTQIVEETVSSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFMNPSTGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR*
Ga0151514_1066931	F035669	N/A	MRENQLNELAGASRLGLSFFNRLIRRIECTKPVAGTGINITQEDSGFKISSSGIVGTDGFSEITLNVCSNGTPATIIVLGK*
Ga0151514_106695	F055438	N/A	MNQPFISSATKANAIIAMRYTKGEHESLMATTKRQDKIELLRDAVKTLITNGIPTRTIAETLNKSQGAIQYHARYLSENGEIKKPKRTSQWRDAIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151514_10669

Overview

Ecosystem & Geography

Associated Families

Sequences