NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151514_10773

Scaffold Ga0151514_10773


Overview

Basic Information
Taxon OID3300011115 Open in IMG/M
Scaffold IDGa0151514_10773 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016May
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13329
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007742Metagenome345Y
F030016Metagenome / Metatranscriptome186Y
F033355Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0151514_1077314F030016AGGAMSKTLAPIAKLNSVEPKMSGAGMPARNKETHSPTANCYATIPSGNNVKATVNKVLSKIK*
Ga0151514_107734F033355N/AMKDNTMQTIKLGKTLYITNRADIFAHHAKCTGKHKPMKSKGHVKRFYPPHGASMSTAEYVVAYETLNKGLTAWDWQPLSTTPTVPEGVDSAWEVDHDSAV*
Ga0151514_107736F007742GGAGMTYYTTKGAAQALADTLAAQDDDAWVYEVHASPRGFYVAVFDFDHFFLGNL*
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